Processing Genome Data For Finding Exact Tandem Reapeats In DNA Sequence

Authors

  • Tushar N. Patil Department of Computer Science & Engineering, Sou. Sushila Danchand Ghodawat Institutes Atigre, Kolhapur
  • Dipak Y. Patil Department of Computer Science & Engineering, Sou. Sushila Danchand Ghodawat Institutes Atigre, Kolhapur
  • Swapnil A. Vichare Department of Computer Science & Engineering, Sou. Sushila Danchand Ghodawat Institutes Atigre, Kolhapur
  • Jayant V. Sathe Department of Computer Science & Engineering, Sou. Sushila Danchand Ghodawat Institutes Atigre, Kolhapur
  • Atul B. Chavan Department of Computer Science & Engineering, Sou. Sushila Danchand Ghodawat Institutes Atigre, Kolhapur

Keywords:

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Abstract

Tandem repeats are multiple duplications of substrings in the DNA that occur contiguously, or at a short
distance, and may involve some mutations (such as substitutions, insertions, and deletions). Tandem repeats have be en
extensively studied also for their association with the class of repeat expansion diseases (mostly affecting the nervous
system). Comparative studies on the output of different tools for finding tandem repeats highlighted significant
differences among the sets of detected tandem repeats, while many authors pointed up how critical it is the right choice
of parametersWe are developing tool which collects, sorts, splice and provides statistical Overview on DNA data files.
Observing various types of ESTs those are useful for downstream applications such as mining microsatellites specific to
an organ, tissue or development stage.This tool can accept or useful for input in multiple formats like Genebank, EST or
FASTA file to invoke tandem repeats with its total count and it’s percentage of existence. And also invoke microsatellite
by assigning list of organism file as per user’s requirements. It is very useful to researcher.

Published

2015-04-25

How to Cite

Tushar N. Patil, Dipak Y. Patil, Swapnil A. Vichare, Jayant V. Sathe, & Atul B. Chavan. (2015). Processing Genome Data For Finding Exact Tandem Reapeats In DNA Sequence. International Journal of Advance Engineering and Research Development (IJAERD), 2(4), 415–421. Retrieved from https://ijaerd.com/index.php/IJAERD/article/view/655